Islamabad also urged New Delhi to observe the 2003 ceasefire, according to Foreign Ministry statement.
Authorities say officials at NADRA have been found to be helping terrorists obtain false identification in exchange for bribes.
Government claims it took the initiative after being approached by concerned citizens.
Army claims over 2,800 militants have been killed since launch of Operation Zarb-e-Azb.
At least 40 suspected militants killed in ongoing offensive.
Woman killed, eight others wounded in continued shelling, claims Pakistan.
Policeman who refused to register case has been suspended following suicide of 14-year-old.
Three other civilians injured in cross-border shelling.
The extremist group remains operationally limited, says spokesman for U.S. mission.
Foreign Ministry hopes to remove misconceptions between two countries during tour.